PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084710001
Common NameGSBRNA2T00084710001, LOC106395529
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 247aa    MW: 26655.7 Da    PI: 8.0842
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084710001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62.1e-38151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa+dC++apyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ 
  GSBRNA2T00084710001  15 PCGACKFLRRKCASDCIFAPYFSSEQgAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAY 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a++ ++k++
  GSBRNA2T00084710001 105 LQAQVMQMKAQ 115
                          ****9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.88514116IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3715113IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MATSGNGITT GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL  60
LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ QVAYLQAQVM QMKAQIAGHQ  120
MSAAGDLRNS SESTHQQYMT WQQTTGSPIG NAYSTAYNHH HQPYYGHVNP NNPVSPQNSL  180
EETFSNTSSD VTTTANVRET QQSGGGVYGH GGLGFHEGYP NKKRSVSYCN SDLGELQALA  240
LRMMKN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084710001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738510.0AB473851.1 Arabidopsis thaliana ASL18 mRNA for ASYMMETRIC LEAVES2-like 18 protein, complete cds.
GenBankAF3453390.0AF345339.1 Arabidopsis thaliana MHK10.15/At2g42430 mRNA, complete cds.
GenBankAF4103340.0AF410334.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
GenBankAF4478900.0AF447890.1 Arabidopsis thaliana LOB DOMAIN 16 (LBD16) mRNA, complete cds.
GenBankBT0008660.0BT000866.1 Arabidopsis thaliana At2g42430/MHK10.15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691409.10.0PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB71e-167LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A078FNU50.0A0A078FNU5_BRANA; BnaC04g48280D protein
STRINGBra016877.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-122lateral organ boundaries-domain 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]